Showing posts with label Algae. Show all posts
Showing posts with label Algae. Show all posts

Monday, May 10, 2010

Alternative for Improving Water Quality


Algae, already being eyed for biofuel production, could be put to use right away to remove nitrogen and phosphorus in livestock manure runoff, according to an Agricultural Research Service (ARS) scientist. That could give resource managers a new eco-friendly option for reducing the level of agricultural pollutants that contaminate water quality in the Chesapeake Bay.

Microbiologist Walter Mulbry works at the ARS Environmental Management and Byproduct Utilization Research Unit in Beltsville, Md., which is located in the Chesapeake Bay watershed. In 2003, Mulbry set up four algal turf scrubber (ATS) raceways outside dairy barns in Beltsville. The shallow 100-foot raceways were covered with nylon netting that created a scaffold where the algae could grow.

For the next three years, from April until December, a submerged water pump at one end of the raceways circulated a mix of fresh water and raw or anaerobically digested dairy manure effluent over the algae. Within two to three weeks after the ATS system was started up every spring, the raceways supported thriving colonies of green filamentous algae.

Algae productivity was highest in the spring and declined during the summer, in part because of higher water temperatures and also because the raceways provided snails and midge larvae ample opportunity to graze on the algae.

Mulbry and his partners harvested wet algae every four to 12 days, dried it, and then analyzed the dried biomass for nitrogen and phosphorus levels. His results indicate that the ATS system recovered 60 to 90 percent of the nitrogen and 70 to 100 percent of the phosphorus from the manure effluents. They also calculated that the cost for this capture was comparable to other manure management practices--around $5 to $6 for each pound of nitrogen that was recovered and around $25 for each pound of phosphorus that was recovered.

Results from this research were published in Bioresource Technology.

W Mulbry, S Kondrad, C Pizarro, E Kebedewesthead. Treatment of dairy manure effluent using freshwater algae: Algal productivity and recovery of manure nutrients using pilot-scale algal turf scrubbers. Bioresource Technology, 2008; 99 (17): 8137 DOI: 10.1016/j.biortech.2008.03.073

Tuesday, April 27, 2010

Innovative method to convert Algae Into a Better Biofuel


Heating and squishing microalgae in a pressure-cooker can fast-forward the crude-oil-making process from millennia to minutes.


University of Michigan professors are working to understand and improve this procedure in an effort to speed up development of affordable biofuels that could replace fossil fuels and power today's engines.
They are also examining the possibility of other new fuel sources such as E. coli bacteria that would feed on waste products from previous bio-oil batches.
"The vision is that nothing would leave the refinery except oil. Everything would get reused. That's one of the things that makes this project novel. It's an integrated process. We're combining hydrothermal, catalytic and biological approaches," said Phillip Savage, an Arthur F. Thurnau Professor in the U-M Department of Chemical Engineering and principal investigator on the $2-million National Science Foundation grant that supports this project. The grant is funded under the American Recovery and Reinvestment Act.
"This research could play a major role in the nation's transition toward energy independence and reduced carbon dioxide emissions from the energy sector," Savage said.
Microalgae are microscopic species of algae: simple, floating plants that don't have leaves, roots or stems. They break down more easily than other potential biofuel source plants because they don't have tough cell walls, Savage said.
Unlike fossil fuels, algae-based biofuels are carbon-neutral. The algae feed on carbon dioxide in the air, and this gets released when the biofuel is burned. Fossil fuel combustion puffs additional carbon into the air without ever taking any back.
The pressure-cooker method the U-M researchers are studying bucks the trend in algae-to-fuel processing. The conventional technique involves cultivating special, oily types of algae, drying the algae and then extracting its oil.
The hydrothermal process this project employs allows researchers to start with less-oily types of algae. The process also eliminates the need to dry it, overcoming two major barriers to large-scale conversion of microalgae to liquid fuels.
"We make an algae soup," Savage said. "We heat it to about 300 degrees and keep the water at high enough pressure to keep it liquid as opposed to steam. We cook it for 30 minutes to an hour and we get a crude bio-oil."
The high temperature and pressure allows the algae to react with the water and break down. Not only does the native oil get released, but proteins and carbohydrates also decompose and add to the fuel yield.
"We're trying to do what nature does when it creates oil, but we don't want to wait millions of years," Savage said. "The hard part is taking the tar that comes out of the pressure cooker and turning it into something you could put in your car, changing the properties so it can flow more easily, and doing it in a way that's affordable."
Savage and his colleagues are taking a broad and deep look at this process. They are investigating ways to use catalysts to bump up the energy density of the resulting bio-oil, thin it into a flowing material and also clean it up by reducing its sulfur and nitrogen content.
Furthermore, they're examining the process from a life-cycle perspective, seeking to recycle waste products to grow new source material for future fuel batches. This doesn't have to be algae, Savage said. It could be any "wet biomass." They are working on growing in their experiments' waste products E. coli that they could potentially use along with algae.
Other collaborators are: Gregory Keoleian, professor of sustainable systems in the School of Natural Resources and Environment and in the Department of Civil and Environmental Engineering; Adam Matzger professor in the Department of Chemistry; Suljo Linic, assistant professor in the Department of Chemical Engineering; Nina Lin, assistant professor in the departments of Chemical Engineering and Biomedical Engineering; Nancy Love, professor and chair of the Department of Civil and Environmental Engineering; and Henry Wang, professor in the departments of Chemical Engineering and Biomedical Engineering.

University of Michigan (2010, April 26). Pressure-cooking algae into a better biofuel. ScienceDaily. Retrieved April 27, 2010, from http://www.sciencedaily.com­ /releases/2010/04/100422153943.htm

Wednesday, April 21, 2010

Generate Electricity from Algae Cells, Engineering marvel


In an electrifying first, Stanford scientists have plugged in to algae cells and harnessed a tiny electric current. They found it at the very source of energy production -- photosynthesis, a plant's method of converting sunlight to chemical energy. It may be a first step toward generating "high efficiency" bioelectricity that doesn't give off carbon dioxide as a byproduct, the researchers say.


"We believe we are the first to extract electrons out of living plant cells," said WonHyoung Ryu, the lead author of the paper published in the March issue of Nano Letters. Ryu conducted the experiments while he was a research associate for mechanical engineering professor Fritz Prinz.
The Stanford research team developed a unique, ultra-sharp nanoelectrode made of gold, specially designed for probing inside cells. They gently pushed it through the algal cell membranes, which sealed around it, and the cell stayed alive. From the photosynthesizing cells, the electrode collected electrons that had been energized by light and the researchers generated a tiny electric current.
"We're still in the scientific stages of the research," said Ryu. "We were dealing with single cells to prove we can harvest the electrons."
Plants use photosynthesis to convert light energy to chemical energy, which is stored in the bonds of sugars they use for food. The process takes place in chloroplasts, the cellular powerhouses that make sugars and give leaves and algae their green color. In the chloroplasts, water is split into oxygen, protons and electrons. Sunlight penetrates the chloroplast and zaps the electrons to a high energy level, and a protein promptly grabs them. The electrons are passed down a series of proteins, which successively capture more and more of the electrons' energy to synthesize sugars until all the electron's energy is spent.
In this experiment, the researchers intercepted the electrons just after they had been excited by light and were at their highest energy levels. They placed the gold electrodes in the chloroplasts of algae cells, and siphoned off the electrons to generate the tiny electrical current.
The result, the researchers say, is electricity production that doesn't release carbon into the atmosphere. The only byproducts of photosynthesis are protons and oxygen.
"This is potentially one of the cleanest energy sources for energy generation," Ryu said. "But the question is, is it economically feasible?"
Ryu said they were able to draw from each cell just one picoampere, an amount of electricity so tiny that they would need a trillion cells photosynthesizing for one hour just to equal the amount of energy stored in a AA battery. In addition, the cells die after an hour. Ryu said tiny leaks in the membrane around the electrode could be killing the cells, or they may be dying because they're losing out on energy they would normally use for their own life processes. One of the next steps would be to tweak the design of the electrode to extend the life of the cell, Ryu said.
Harvesting electrons this way would be more efficient than burning biofuels, as most plants that are burned for fuel ultimately store only about 3 to 6 percent of available solar energy, Ryu said. His process bypasses the need for combustion, which only harnesses a portion of a plant's stored energy. Electron harvesting in this study was about 20 percent efficient. Ryu said it could theoretically reach 100 percent efficiency one day. (Photovoltaic solar cells are currently about 20-40-percent efficient.)
Possible next steps would be to use a plant with larger chloroplasts for a larger collecting area, and a bigger electrode that could capture more electrons. With a longer-lived plant and better collecting ability, they could scale up the process, Ryu said. Ryu is now a professor at Yonsei University in Seoul, South Korea.
Other authors of the paper are Prinz, the senior author,; Seoung-Jai Bai, Tibor Fabian, Rainer J. Fasching, Joong Sun Park, and Zubin Huang, all researchers in the Rapid Protoyping Laboratory at Stanford University; and Jeffrey Moseley and Arthur Grossman, both researchers in the Department of Plant Biology at the Carnegie Institution and Department of Biological Sciences.

WonHyoung Ryu, Seoung-Jai Bai, Joong Sun Park, Zubin Huang, Jeffrey Moseley, Tibor Fabian, Rainer J. Fasching, Arthur R. Grossman, Fritz B. Prinz. Direct Extraction of Photosynthetic Electrons from Single Algal Cells by Nanoprobing System. Nano Letters, 2010; 10 (4): 1137 DOI: 10.1021/nl903141j

Saturday, April 17, 2010

Clues from Green Algae on the Origin of Males and Females


A multicellular green alga, Volvox carteri, may have finally unlocked the secrets behind the evolution of different sexes. A team led by researchers at the Salk Institute for Biological Studies has shown that the genetic region that determines sex in Volvox has changed dramatically relative to that of the closely related unicellular alga Chlamydomonas reinhardtii.

Their findings, which will be published in the April 16th issue of the journal Science, provide the first empirical support for a model of the evolution of two different sexes whereby expansion of a sex-determining region creates genetic diversity followed by genes taking on new functions related to the production of male and female reproductive cells termed gametes.

"Until now, sex-determining chromosomes had generally been viewed as regions of decay, steadily losing genes that are not involved in sexual reproduction," explains James Umen, Ph.D., assistant professor in the Plant Molecular and Cellular Biology Laboratory at the Salk Institute, who led the team conducting the study. "Our study shows the opposite-that such regions can expand and generate new genetic material much more rapidly than the rest of the genome."

Most multicellular organisms such as plants and animals have two distinct sexes with females producing large immotile eggs and males producing small motile sperm. While unicellular organisms can also reproduce sexually, the two sexes of single-celled species are typically indistinguishable from each other and are thought to represent an ancestral or early evolutionary state. However, the large distances that separate plants or animals from their closest unicellular relatives have precluded understanding the evolutionary transition to male-female dimorphism.

"In unicellular organisms like Chlamydomonas, the gametes look the same. In contrast, multicellular organisms, including Volvox, produce eggs and sperm-they are distinctly male and female. Yet no one really has any idea how the evolution of males and females occurs or what genetic changes were required to achieve it," explains Umen.

Although the genomes of Chlamydomonas and Volvox are similar in most ways, there is one glaring exception that provided the Salk researchers with an entrée into the origin of male and female sexes-the so-called mating locus that functions in much the same way as human X and Y chromosomes to determine gender.

When Umen and his colleagues examined the mating locus genes in Chlamydomonas and Volvox they found that they shared some of the same genes, as you would expect from closely related species. However, Volvox also now possessed a surprising variety of new genes that were added to its expanded mating locus, and expression of many of these genes had come under the control of the male or female differentiation programs.

"We found that the Volvox mating locus is about five times bigger than that of Chlamydomonas," says postdoctoral researcher and co-first author Patrick Ferris, Ph.D. "We wanted to understand the evolutionary basis of this. How did it happen? And where did these new genes come from?"

To trace the origin of the added genes, the team looked to see if they could also find them in Chlamydomonas. "We found that although some of the mating locus genes in Volvox are completely new, many of them have counterparts in Chlamydomonas that are near the mating locus," explains co-first author Bradley Olson, Ph.D. "So Volvox has taken these genes that initially had nothing to do with sex, incorporated them into its mating locus, and started using some of them in its sexual reproductive cycle."

The team is now studying these new mating locus genes to understand their individual roles in sex determination and sexual development.

They have already identified a Volvox mating locus gene named MAT3 that appears to have evolved a new role in sexual differentiation. MAT3 is related to a human gene called the retinoblastoma tumor suppressor that controls cell division and is frequently mutated in cancer cells. In Volvox, MAT3 probably has a role in controlling cell division as it does in animals and plants, but has also acquired intriguing gender-specific differences in its sequence and expression pattern that correlate with differences in male/female reproductive development. Umen's laboratory is following up on this finding to determine the newly evolved role of MAT3 in Volvox gender specification.

"This study shows that Volvox and its relatives are a powerful model in which to study the evolution of sex," says Umen. "It provides us with a system in which we can retrace evolutionary history to ask questions about the origin of gender and other traits that are difficult to approach in groups such as plants and animals."

The team is also working with collaborators to examine the mating locus of an evolutionary intermediate between Chlamydomonas and Volvox called Gonium,which has between four and 16 cells. "Gonium allows us to look at the evolutionary steps between Chlamydomonas and Volvox to better understand how the evolutionary process happened," says Ferris.

In addition to Ferris, Olson and Umen, contributors to this work were Peter L. De Hoff, Ph.D., and Sa Geng, Ph.D. at the Salk Institute; Stephen Douglass, David Casero and Matteo Pellegrini at UCLA; Simon Prochnik at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), Rhitu Rai at the Salk Institute and the Indian Agricultural Research Institute, New Delhi; Jane Grimwood and Jeremy Schmutz at Hudson Alpha Institute for Biotechnology, Alabama; Ichiro Nishii at Nara Women's University, Nara, Japan; and Takashi Hamaji and Hisayoshi Nozaki at the University of Tokyo, Japan.

Patrick Ferris, Bradley J. S. C. Olson, Peter L. De Hoff, Stephen Douglass, David Casero, Simon Prochnik, Sa Geng, Rhitu Rai, Jane Grimwood, Jeremy Schmutz, Ichiro Nishii, Takashi Hamaji, Hisayoshi Nozaki, Matteo Pellegrini, and James G. Umen. Evolution of an Expanded Sex-Determining Locus in Volvox. Science, 16 April 2010 328: 351-354 DOI: 10.1126/science.1186222


Saturday, March 13, 2010

Genetic Mapping of Algae Biofuel Species Groundwork Done


Using green algae to produce hydrocarbon oil for biofuel production is nothing new; nature has been doing so for hundreds of millions of years, according a Texas AgriLife Research scientist.

"Oils from the green algae Botryococcus braunii can be readily detected in petroleum deposits and coal deposits suggesting that B. braunii has been a contributor to developing these deposits and may be the major contributor," said Dr. Timothy Devarenne, AgriLife Research scientist with the Texas A&M University department of biochemistry and biophysics. "This means that we are already using these oils to produce gasoline from petroleum."

It's not just a gee-whiz science trivia, Devarenne said. B. braunii is a prime candidate for biofuel production because some races of the green algae typically "accumulate hydrocarbons from to 30 percent to 40 percent of their dry weight, and are capable of obtaining hydrocarbon contents up to 86 percent of their dry weight.

"As a group, algae may be the only photosynthetic organism capable of producing enough biofuel to meet transportation fuel demands."

Devarenne is part of a team comprised of other scientists with AgriLife Research, the University of Kentucky and the University of Tokyo trying to understand more about B. braunii, including its genetic sequence and its family history.

"Without understanding how the cellular machinery of a given algae works on the molecular level, it won't be possible to improve characteristics such as oil production, faster growth rates or increased photosynthesis," Devarenne said.

Like most green algae, B. braunii is capable of producing great amounts of hydrocarbon oils in a very small land area.

B. braunii algae show particular promise not just because of their high production of oil but also because of the type of oil they produce, Devarenne said. While many high-oil-producing algae create vegetable-type oils, the oil from B. braunii, known as botryococcenes, are similar to petroleum.

"The fuels derived from B. braunii hydrocarbons are chemically identical to gasoline, diesel and kerosene," Devarenne said. "Thus, we do not call them biodiesel or bio-gasoline; they are simply diesel and gasoline. To produce these fuels from B. braunii, the hydrocarbons are processed exactly the same as petroleum is processed and thus generates the exact same fuels. Remember, these B. braunii hydrocarbons are a main constituent of petroleum. So there is no difference other than the millions of years petroleum spent underground."

But, a shortcoming of B. braunii is its relatively slow growth rate. While the algae that produce 'vegetable-type' oils may double their growth every six to 12 hours, B. braunii's doubling rate is about four days, he said.

"Thus, getting large amounts of oil from B. braunii is more time consuming and thus more costly," Devarenne said. "So, by knowing the genome sequence we can possibly identify genes involved in cell division and manipulate them to reduce the doubling rate."

Despite these characteristics and economic potential of algae, only six species of algae have had their genomes fully sequenced and annotated, Devarenne said. And B. braunii is not one of the six.

Devarenne and his colleagues have done some of the groundwork in better understanding B. braunii and sequencing its genome.

They are working the Berkeley strain of the B race of B. braunii, so named because it was first isolated at the University of California at Berkeley. The team has determined the genome size and an estimate of the B race's guanine-cytosine content, both of which are essential to mapping the full genome, he said. There are also races A and L of B. braunii, but they were not looked at by the team.

Guanine-cytosine bonds are one of base pairs composing DNA structure. Adenine-thymine is the other possible base pair.

"Genomes with high guanine-cytosine content can be difficult to sequence and knowing the guanine-cytosine content can help to assess the amount of resources needed for genome sequencing," Devarenne said.

The team determined B. braunii's genome size to be 166.2 ± 2.2 million base pairs, Devarenne said. The size of the human genome is about 3.1 billion base pairs. That of the house mouse is also about 3 billion base pairs. But the B. brauniigenome size is larger than any of the other six previously sequenced green algae genomes.

The team also looked at the phylogenetic placement of B. braunii -- where it belongs in the family tree of similar algae species. Though they knew from the work of other scientists that the B race of B. braunii was distinct from other races of B. braunii, there was some question that the genetic samples of the B race used in a previous study by other scientists might be contaminated by another algal species.

To check this, they used a process called reverse transcription to isolate genes from a pure culture of the B race of B. braunii, and then mapped those genes to confirm the relationship of the B race to other races of B. braunii.

"Our results support the original Berkeley DNA sequence used for phylogenetic placement was from a contaminating algae," Devarenne said. "And our study places the B race of B. brauniiin the correct location on the 'algal family tree'."

The actual genome sequencing and mapping will be performed by DOE's Joint Genome Institute.

"We've submitted genomic DNA from B. braunii for JGI to use in sequencing, but that hasn't begun yet," he said.

Devarenne's research partners include: graduate student Taylor L. Weiss, Texas A&M department of biochemistry and biophysics; Dr. J. Spencer Johnston, Texas A&M department of entomology; Joe Chappell, University of Kentucky department of plant and soil sciences; and Shigeru Okada, the University of Tokyo graduate school of agricultural and life sciences.

The results and methods of their study will be published online in the Journal of Phycology, an international journal of algae research, this summer.

Thursday, March 11, 2010

The impact of snorkeling on fish and macroalgae communities


A new study on snorkelers in the Mediterranean sea finds a rare piece of good news about human impacts on the marine environment.
Joachim Clauedet and fellow researchers looked at snorkeling within the Cerbère Banyuls Natural Marine Reserve in the French Mediterranean and found that the activity had no observable effect on the structure of fish or macroalgae communities.
Managers of the protected area had constructed a self-guided underwater snorkeling trail within the buffer zone to try and concentrate any negative impacts in one area.
The researchers surveyed fish and macroalgae along the trail and a control site not subject to snorkeling. They found no differences in species richness or abundance of fish communities between the snorkeling trail or the control site.
Similarly they found no differences between sites in the cover of 3 macroalgae species chosen as indicators of potential human disturbance. They did find that fish and macroalgae communities changed over the course of the year, however, this occurred at both the snorkeling trail and the control site indicating that other factors were responsible.
The findings are somewhat surprising given the level of use that the underwater trail received. However, the results of the study need to be read with a little bit of caution.
Past studies have shown that trampling or swimming with fins can cause impacts to the branching growth forms of coral communities. However, in this particular reserve, similarly sensitive organisms do not occur along the snorkeling trail.
Nevertheless, the results are encouraging. The authors hypothesize that astute management of recreational use may be partly responsible for the positive outcome. They write,
"Impacts may have been avoided because [informative buoys] are settled where water is deep enough (bottoms deeper than 5 m). A device has been established to allow snorkelers to hang on the buoys while staying horizontally at the surface, to reduce fin damage… the absence of impact could also be due to the information provided to the snorkelers by the signs at the trail entrance or by the informative buoys distributed along the trail. Making users aware of the damage they can cause could be a serious option to reduce impacts in coastal areas with high frequentation."
--Reviewed by Rob Goldstein,
Conservation Maven
an online hub for the conservation community

Ref. Claudet, J., Lenfant, P., & Schrimm, M. (2010). Snorkelers impact on fish communities and algae in a temperate marine protected area Biodiversity and Conservation DOI: 10.1007/s10531-010-9794-0

Tuesday, February 23, 2010

Link Between Marine Algae and Whale Diversity


A new paper by researchers at George Mason University and the University of Otago in New Zealand shows a strong link between the diversity of organisms at the bottom of the food chain and the diversity of mammals at the top.Mark D. Uhen, a geologist at Mason, says that throughout the last 30 million years, changes in the diversity of whale species living at any given time period correlates with the evolution and diversification of diatoms, tiny, abundant algae that live in the ocean. In the paper, published in the latest issue of Science, Uhen and co-author Felix G. Mark of Otago show that the more kinds of diatoms living in a time period, the more kinds of whales there are.Looking at thousands of published accounts of whale fossil records, the researchers assembled the records in a database to analyze and pinpoint the various fossils. The fossil records show a direct link between the productivity of the ocean and the variety of whale fossils. Uhen says they also found a correlation between global changes and fossil variety."This study shows that if we look at the bottom of the food chain, it might tell you something about the top," says Uhen. "Diatoms are key primary producers in the modern ocean, and thus help to form the base of the marine food chain. The fossil record clearly shows that diatoms and whales rose and fell in diversity together during the last 30 million years."Uhen says this is the first time that such a correlation has been shown. Though scientists in the past have tried to answer the question of how the modern diversity of whale and dolphins arise, this question has been difficult to answer. The fossil record might not truly reflect evolutionary history, says Uhen. "Is it possible that the diversity of fossils we find through geological time might really just reflect the amount of preserved sedimentary rock paleontologists can search -- the more rock there is, the more fossils we find? This comprehensive study has shown that the diversity of these fossils is in fact not driven by the sedimentary rock record."The researchers hope these findings will encourage other specialists to look at other animals with a similar narrow ecology to see if this link translates.Uhen is a term assistant professor in Mason's Department of Atmospheric, Oceanic and Earth Sciences and is an expert in marine mammal fossils. In the future, he hopes to conduct research on how the body size of whales changes over time, and how whales became the largest living organisms in the world.
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Friday, February 12, 2010

NASA develops algae to fuel system, tests in Tampa Bay


As a clean energy alternative, NASA invented an algae photo-bioreactor that grows algae in municipal wastewater to produce biofuel and a variety of other products. The NASA bioreactor is an Offshore Membrane Enclosure for Growing Algae (OMEGA), which won't compete with agriculture for land, fertilizer, or freshwater.

NASA's Ames Research Center, Moffett Field, Calif., licensed the patent pending algae photo-bioreactor to Algae Systems, LLC, Carson City, Nev., which plans to develop and pilot the technology in Tampa Bay, Florida. The company plans to refine and integrate the NASA technology into biorefineries to produce renewable energy products, including diesel and jet fuel.

"NASA has a long history of developing very successful energy conversion devices and novel life support systems," said Lisa Lockyer, deputy director of the New Ventures and Communication Directorate at NASA Ames. "NASA is excited to support the commercialization of an algae bioreactor with potential for providing renewable energy here on Earth."

The OMEGA system consists of large plastic bags with inserts of forward-osmosis membranes that grow freshwater algae in processed wastewater by photosynthesis. Using energy from the sun, the algae absorb carbon dioxide from the atmosphere and nutrients from the wastewater to produce biomass and oxygen. As the algae grow, the nutrients are contained in the enclosures, while the cleansed freshwater is released into the surrounding ocean through the forward-osmosis membranes.

"The OMEGA technology has transformational powers. It can convert sewage and carbon dioxide into abundant and inexpensive fuels," said Matthew Atwood, president and founder of Algae Systems. "The technology is simple and scalable enough to create an inexpensive, local energy supply that also creates jobs to sustain it."

When deployed in contaminated and "dead zone" coastal areas, this system may help remediate these zones by removing and utilizing the nutrients that cause them. The forward-osmosis membranes use relatively small amounts of external energy compared to the conventional methods of harvesting algae, which have an energy intensive de-watering process.

Potential benefits include oil production from the harvested algae, and conversion of municipal wastewater into clean water before it is released into the ocean. After the oil is extracted from the algae, the algal remains can be used to make fertilizer, animal feed, cosmetics, or other valuable products.

This successful spinoff of NASA-derived technology will help support the commercial development of a new algae-based biofuels industry and wastewater treatment.

For more information about NASA's Innovative Partnerships Program, and NASA technology infusion activities, visit:

http://ipp.nasa.gov

For information about NASA and agency programs, visit:

http://www.nasa.gov

For information about Algae Systems, visit:
http://www.algaesystems.com

Wednesday, December 02, 2009

Paper-thin Batteries Made from Algae


Imagine wrapping paper that could be a gift in and of itself because it lights up with words like "Happy Birthday." That is one potential application of a new biodegradable battery made of cellulose, the stuff of paper. Scientists worldwide are striving to develop thin, flexible, lightweight, inexpensive, environmentally friendly batteries made entirely from nonmetal parts. Among the most promising materials for these batteries are conducting polymers. However, until now these have impractical for use in batteries - for instance, their ability to hold a charge often degrades over use. The key to this new battery turned out to be an often bothersome green algae known as Cladophora. Rotting heaps of this hairlike freshwater plant throughout the world can lead to unsightly, foul-smelling beaches. This algae makes an unusual kind of cellulose typified by a very large surface area, 100 times that of the cellulose found in paper. This allowed researchers to dramatically increase the amount of conducting polymer available for use in the new device, enabling it to better recharge, hold and discharge electricity. "We have long hoped to find some sort of constructive use for the material from algae blooms and have now been shown this to be possible," said researcher Maria Strømme, a nanotechnologist at Uppsala University in Sweden. "This creates new possibilities for large-scale production of environmentally friendly, cost-effective, lightweight energy storage systems." The new batteries consisted of extremely thin layers of conducting polymer just 40 to 50 nanometers or billionths of a meter wide coating algae cellulose fibers only 20 to 30 nanometers wide that were collected into paper sheets. "They're very easy to make," Strømme said. They could hold 50 to 200 percent more charge than similar conducting polymer batteries, and once better optimized, they might even be competitive with commercial lithium batteries, the researchers noted. They also recharged much faster than conventional rechargeable batteries - while a regular battery takes at least an hour to recharge, the new batteries could recharge in anywhere from eight minutes to just 11 seconds. The new battery also showed a dramatic boost in the ability to hold a charge over use. While a comparable polymer battery showed a 50 percent drop in the amount of charge it could hold after 60 cycles of discharging and recharging, the new battery showed just a 6 percent loss through 100 charging cycles. "When you have thick polymer layers, it's hard to get all the material to recharge properly, and it turns into an insulator, so you lose capacity," said researcher Gustav Nyström, an electrochemist at Uppsala University. "When you have thin layers, you can get it fully discharged and recharged." The researchers suggest their batteries appear well-suited for applications involving flexible electronics, such as clothing and packaging. "We're not focused on replacing lithium ion batteries - we want to find new applications where batteries are not used today," Strømme told LiveScience. "What if you could put batteries inside wallpaper to charge sensors in your home? If you could put this into clothes, can you couple that with detectors to analyze sweat from your body to tell if there's anything wrong?" Future directions of research include seeing how much charge these batteries lose over time, a problem with polymer batteries and all batteries in general. They also want to see how much they can scale up these batteries, "see if we can make them much, much larger," Strømme said.

Tuesday, November 03, 2009

Killer Algae: Key Player In Mass Extinctions


Supervolcanoes and cosmic impacts get all the terrible glory for causing mass extinctions, but a new theory suggests lowly algae may be the killer behind the world's great species annihilations.


Today, just about anywhere there is water, there can be toxic algae. The microscopic plants usually exist in small concentrations, but a sudden warming in the water or an injection of dust or sediment from land can trigger a bloom that kills thousands of fish, poisons shellfish, or even humans.
James Castle and John Rodgers of Clemson University think the same thing happened during the five largest mass extinctions in Earth's history. Each time a large die off occurred, they found a spike in the number of fossil algae mats called stromatolites strewn around the planet. Castle will be presenting the research on October 19 at the annual meeting of the Geological Society of America in Portland, Oregon.
"If you go through theories of mass extinctions, there are always some unanswered questions," Castle said. "For example, an impact – how does that cause species to go extinct? Is it climate change, dust in the atmosphere? It's probably not going to kill off all these species on its own."
But as the nutrient-rich fallout from the disaster lands in the water, it becomes food for algae. They explode in population, releasing chemicals that can act as anything from skin irritants to potent neurotoxins. Plants on land can pick up the compounds in their roots, and pass them on to herbivorous animals.
If the theory is right, it answers a lot of questions about how species died off in the ancient world. It also raises concerns for how today's algae may damage the ecosystem in a warmer world.
"Algae growth is favored by warmer temperatures," Castle said. "You get accelerated metabolism and reproduction of these organisms, and the effect appears to be enhanced for species of toxin-producing cyanobacteria."
He added that toxic algae in the United States appear to be migrating slowly northward through the country's ponds and lakes, and along the coast as temperatures creep upward. Their expanding range portends a host of problems for fish and wildlife, but also for humans, as algae increasingly invade reservoirs and other sources of drinking water.
Journal reference:
Castle et al. Hypothesis for the role of toxin-producing algae in Phanerozoic mass extinctions based on evidence from the geologic record and modern environments. Environmental Geosciences, 2009; 16 (1): 1 DOI: 10.1306/eg.08110808003
Adapted from materials provided by Geological Society of America, via EurekAlert!, a service of AAAS.

Thursday, May 14, 2009

New Red Alga Discovered In Mediterranean Sea


An international team of researchers led by the University of Girona (UoG) has described a new species of red algae (Leptofauchea coralligena) in the western Mediterranean. This is the only species of the Leptofauchea genus currently known to be in the Mediterranean."The species that we have described, Leptofauchea coralligena, is a deep water red alga which can often be found in the western Mediterranean between the end of winter and autumn. It is of great ecological importance, given that it is a species characteristic of the coral lining situated between 30 and 45 metres below the surface", explains Conxi RodrĂ­guez-Prieto, main author of the study and director of the UoG's Marine Benthic Algae team.The study of the red algae is mainly based on the morphology of the female reproductive structure and on the post-fertilisation stages. RodrĂ­guez-Prieto affirms that "many macroalgae species were described based on sterile specimens, leading to many being classified in the wrong taxonomic groups (order, family, genus, species, and even class)".This is what happened with Leptofauchea coralligena, which, "despite being a very common species, until now was thought to belong to the Rhodymenia genus, and specifically to the Rhodymenia ardissonei species", clarifies the researcher.However, "the authentic Rhodymenia ardissonei is a common but sparse species which lives close to the surface and reproduces in a different manner (which is why it belongs even to a different family)", points out the scientist. The description of Leptofauchea coralligena, a new species for science, was possible thanks to the fact that researchers found fertile specimens and could study their reproduction.The study, recently published in the European Journal of Phycology, included the collaboration of Olivier De Clerck, a researcher from the University of Ghent (Belgium) and phycologist who is "very well-known internationally and someone with whom we have collaborated for years", adds RodrĂ­guez-Prieto. DNA sequencing was used to confirm that the new species belongs to the Leptofauchea genus.Getting to know marine biodiversityThe Mediterranean has a great diversity of algae, but they are little known due to being so difficult to collect; they grow all the way from the surface down to 110 metres in depth. According to RodrĂ­guez-Prieto, "the study of marine macroalgae is notably delayed in comparison to that of land plants", because individual diving did not begin until the mid 20th century.The scientific community considers the "conservation of biodiversity" fundamental , and it is therefore necessary to know which species currently exist and what their physiological requirements are.The UoG team, specialised in the reproduction, ecophysiology and ecology of red algae, especially those in deep water, is currently carrying out diverse studies on the effects of climate change. The scientists hope to "determine if the warming of the Mediterranean may affect the development and growth of various macroalgae species, among them the Leptofauchea coralligena", says RodrĂ­guez-Prieto.Journal reference:Rodriguez-Prieto et al. Leptofauchea coralligena (Faucheaceae, Rhodophyta), a new species from the Mediterranean Sea. European Journal of Phycology, 2009; 44 (1): 107 DOI: 10.1080/09670260802357111Plataforma SINC

Monday, May 11, 2009

Genes from Tiny Algae Shed Light on Big Role Managing Carbon in World's Oceans & Coping with Environmental Change


CA-Scientists from two-dozen research organizations led by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI) and the Monterey Bay Aquarium Research Institute (MBARI) have decoded genomes of two algal strains, highlighting the genes enabling them to capture carbon and maintain its delicate balance in the oceans. These findings, from a team led by Alexandra Z. Worden of MBARI and published in the April 10 edition of the journal Science, will illuminate cellular processes related to algae-derived biofuels being pursued by DOE scientists.The study sampled two geographically diverse isolates of the photosynthetic algal genus Micromonas-one from the South Pacific, the other from the English Channel. The analysis identified approximately 10,000 genes in each, compressed into genomes totaling about 22 million nucleotides. "Yet, surprisingly, they are far more diverse than we originally thought," said Worden. "These two picoeukaryotes, often considered to be the same species, only share about 90 percent of their genes." To put this in perspective, humans and some primates have about 98 percent genes in common. Worden said that the algae's divergent gene complement may cause them to access and respond to the environment differently. "This also means that as the environment changes, these different populations will be subject to different effects, and we don't know whether they will respond in a similar fashion." She said that their apparently broad physiological range (exemplified by their expansive geographical range) may result in increased resilience as compared to closely related species, enabling them to survive environmental change better than organisms with a narrower geographic range. Testing the hypotheses developed through cataloging their respective inventory of genes, Worden said, will go a long way towards understanding their biology and ecology. Algae were blazing the pathway of photosynthesis long before plants colonized land-so the results bear significantly on terrestrial plant research as well."Genome sequencing of Micromonas and the subsequent comparative analysis with other algae previously sequenced by DOE JGI and Genoscope [France], have proven immensely powerful for elucidating the basic 'toolkit' of genes integral not only to the effective carbon cycling capabilities of green algae, but to those they have in common with land plants," said Eddy Rubin, DOE JGI Director.Tiny Micromonas, less than two microns in diameter, or roughly a 50th of the width of a human hair, are one of the few globally distributed marine algal species, thriving throughout the world's oceans from the tropics to the poles. They capture CO2, sunlight, water, and nutrients and produce carbohydrates and oxygen. Their productivity-which provides food resources within marine food webs-as well as their knack for capturing carbon, and influencing the carbon flux that may have bearing on climate change, make these algae keen target of study."Micromonas is a representative of a well-sampled group of green algae with the largest number of sequenced genomes. With these four genomes in hand--two Micromonas and two Ostreococcus--we can observe patterns of genome organization as well as the diversity between different organisms in this group," said JGI's Igor Grigoriev, one of the senior authors of the paper.Embedded in the genetic code are clues about how photosynthesis transformed from a barren orb into the earth we know today."The Micromonas genomes encapsulate features that now appear to have been common to the ancestral algae that initiated the billion-year trajectory that led to the 'greening'-the rise of land plants-of the planet," said Worden. As highlighted in the Science article, comparing the strains to each other and in turn to the other characterized algal and plant genomes, will help to illustrate the dynamic nature of evolutionary processes and provide a springboard for unraveling the functional aspects of these and other phytoplankton populations.Transmission electron micrograph of one of the smallest known eukaryotic algae, Micromonas. Credit for TEM: A.Z. Worden, T. Deerinck, M. Terada, J. Obiyashi and M. Ellisman (MBARI and NCMIR).Motility is another distinguishing aspect of the ecology of Micromonas. In the relatively viscous saltwater of the ocean, the flagellated Micromonas could give Michael Phelps a run for his money. Unlike other algae genera sequenced to date, these swift swimmers can cut through the water column at a rate of 50 body lengths per second, and are phototactic, meaning that they can swim towards the sunlight from which they derive their energy.In previous studies, Worden and her colleagues showed that picoeukaryotes such as Micromonas comprised, on average, only a quarter of the picophytoplankton cells in a Pacific Ocean sampling, but were responsible for three-quarters of the net carbon production. They were also shown to be subject to heavy grazing pressure; their lack of a cell wall may make them more digestible as prey. In this case carbon may be efficiently sequestered by the "biological pump," the suite of processes that enable the algae to capture atmospheric carbon and transport it from the ocean surface zones to the depths below.This research serves as a complement to field studies seeking to confirm emerging key players in global carbon fixation. "By understanding which genes a specific strain employs under certain conditions, we gain a view into the factors that influence the success of one group over another," Worden said. "We may then be able to develop models that could more effectively predict a range of possible future scenarios, that will result from current climate change." Micromonas may well serve as a bellwether for current and future ocean conditions, helping to guide appropriate decision making, which given the prevailing CO2 trends, is urgently needed.The genome sequencing of Micromonas was conducted under the auspices of the DOE JGI Community Sequencing Program (CSP), supported by the DOE Office of Science. The CSP was created to provide the scientific community at large with access to high-throughput sequencing for projects selected on the criteria of scientific merit-judged through independent peer review-and relevance to the DOE missions.The U.S. Department of Energy Joint Genome Institute, supported by DOE's Office of Science, is committed to advancing genomics in support of DOE missions related to clean energy generation and environmental characterization and cleanup. DOE JGI, located in Walnut Creek, Calif., provides integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to these challenges.For more information, contactDavid GilbertDOE JGI Public Affairs Manager(925) 296-5643http://mail.niot.res.in/cgi-bin/openwebmail/openwebmail-send.pl?sessionid=prince*mail.niot.res.in-session-0.515626584495291&folder=INBOX&page=5&sort=date&keyword=&searchtype=subject&action=composemessage&message_id=%3C12FD11892CE76642889A92BE75ABF8695712FA398D%40EMSCM003.sagemsmrd01.sa.gov.au%3E&compose_caller=read&to=degilbert%40lbl.gov

Friday, April 10, 2009

Genes From Tiny Algae Shed Light On Big Role Managing Carbon In World's Oceans


Scientists from two-dozen research organizations led by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI) and the Monterey Bay Aquarium Research Institute (MBARI) have decoded genomes of two algal strains, highlighting the genes enabling them to capture carbon and maintain its delicate balance in the oceans. These findings, from a team led by Alexandra Z. Worden of MBARI and published in the April 10 edition of the journal Science, will illuminate cellular processes related to algae-derived biofuels being pursued by DOE scientists.


The study sampled two geographically diverse isolates of the photosynthetic algal genus Micromonas—one from the South Pacific, the other from the English Channel. The analysis identified approximately 10,000 genes in each, compressed into genomes totaling about 22 million nucleotides. "Yet, surprisingly, they are far more diverse than we originally thought," said Worden. "These two picoeukaryotes, often considered to be the same species, only share about 90 percent of their genes."
To put this in perspective, humans and some primates have about 98 percent genes in common. Worden said that the algae's divergent gene complement may cause them to access and respond to the environment differently. "This also means that as the environment changes, these different populations will be subject to different effects, and we don't know whether they will respond in a similar fashion." She said that their apparently broad physiological range (exemplified by their expansive geographical range) may result in increased resilience as compared to closely related species, enabling them to survive environmental change better than organisms with a narrower geographic range. Testing the hypotheses developed through cataloging their respective inventory of genes, Worden said, will go a long way towards understanding their biology and ecology.
Algae were blazing the pathway of photosynthesis long before plants colonized land—so the results bear significantly on terrestrial plant research as well.
"Genome sequencing of Micromonas and the subsequent comparative analysis with other algae previously sequenced by DOE JGI and Genoscope [France], have proven immensely powerful for elucidating the basic 'toolkit' of genes integral not only to the effective carbon cycling capabilities of green algae, but to those they have in common with land plants," said Eddy Rubin, DOE JGI Director.
Tiny Micromonas, less than two microns in diameter, or roughly a 50th of the width of a human hair, are one of the few globally distributed marine algal species, thriving throughout the world's oceans from the tropics to the poles. They capture CO2, sunlight, water, and nutrients and produce carbohydrates and oxygen. Their productivity—which provides food resources within marine food webs—as well as their knack for capturing carbon, and influencing the carbon flux that may have bearing on climate change, make these algae keen target of study.
"Micromonas is a representative of a well-sampled group of green algae with the largest number of sequenced genomes. With these four genomes in hand--two Micromonas and two Ostreococcus--we can observe patterns of genome organization as well as the diversity between different organisms in this group," said JGI's Igor Grigoriev, one of the senior authors of the paper.
Embedded in the genetic code are clues about how photosynthesis transformed from a barren orb into the earth we know today.
"The Micromonas genomes encapsulate features that now appear to have been common to the ancestral algae that initiated the billion-year trajectory that led to the 'greening'—the rise of land plants—of the planet," said Worden. As highlighted in the Science article, comparing the strains to each other and in turn to the other characterized algal and plant genomes, will help to illustrate the dynamic nature of evolutionary processes and provide a springboard for unraveling the functional aspects of these and other phytoplankton populations.
Motility is another distinguishing aspect of the ecology of Micromonas. In the relatively viscous saltwater of the ocean, the flagellated Micromonas could give Michael Phelps a run for his money. Unlike other algae genera sequenced to date, these swift swimmers can cut through the water column at a rate of 50 body lengths per second, and are phototactic, meaning that they can swim towards the sunlight from which they derive their energy.
In previous studies, Worden and her colleagues showed that picoeukaryotes such as Micromonas comprised, on average, only a quarter of the picophytoplankton cells in a Pacific Ocean sampling, but were responsible for three-quarters of the net carbon production. They were also shown to be subject to heavy grazing pressure; their lack of a cell wall may make them more digestible as prey. In this case carbon may be efficiently sequestered by the "biological pump," the suite of processes that enable the algae to capture atmospheric carbon and transport it from the ocean surface zones to the depths below.
This research serves as a complement to field studies seeking to confirm emerging key players in global carbon fixation. "By understanding which genes a specific strain employs under certain conditions, we gain a view into the factors that influence the success of one group over another," Worden said. "We may then be able to develop models that could more effectively predict a range of possible future scenarios, that will result from current climate change." Micromonas may well serve as a bellwether for current and future ocean conditions, helping to guide appropriate decision making, which given the prevailing CO2 trends, is urgently needed.
The genome sequencing of Micromonas was conducted under the auspices of the DOE JGI Community Sequencing Program (CSP), supported by the DOE Office of Science.
Journal reference:
Worden et al. Green Evolution and Dynamic Adaptations Revealed by Genomes of the Marine Picoeukaryotes Micromonas. Science, 2009; 324 (5924): 268-272 DOI: 10.1126/science.1167222

Monday, March 16, 2009

Silica Algae Reveal How Ecosystems React To Climate Changes


A newly published dissertation by Linda Ampel from the Department of Physical Geography and Quaternary Geology at Stockholm University in Sweden examined how rapid climate changes during the most recent ice age affected ecosystems in an area in continental Europe.


Rapid and extensive climate changes have taken place on several occasions in the past. For example, the latest ice age (lasting from about 115,000 to 11,500 years ago) is characterized by several rapid and dramatic climate swings. These swings recurred in cycles of roughly 1,500 years and were originally discovered through studies of ice cores from Greenland in the early 1990s. These cycles started with an extremely rapid rise in temperatures, over just a few years or decades, of as much as 8-16o C over Greenland.
Linda Ampel studied how these rapid cycles in the climate affected ecosystems in an area in continental Europe. The study was based on analyses of sediment cores from an overgrown lake named Les Echets in eastern France and focuses on a time interval between 40,000 and 16,000 ago.
The findings are based on analyses of fossil silica algae, diatoms. Various species of diatoms prefer different water conditions relating to physical and chemical parameters such as temperature, salinity, access to nutrients, light, water depth, or available types of places to grow. These parameters, in turn, are affected by climate. Different species of diatoms can therefore indicate how the water environment changed as a consequence of the climate in the past.
Diatom analyses of the environmental archive from Les Echets, together with further analyses of chemical and biological parameters such as content of organic material and pollen grains from trees and other plants preserved in the lake, show that the ecosystems in the lake and its surroundings underwent marked changes during the latest ice age as a consequence of these 1,500-year cycles. The adaptation of the ecosystems prompted by the recurring warm periods took place as quickly as within 50 to 200 years.
“These findings show that ecosystems have changed rapidly in reaction to climate changes in the past, which indicates that quick adaptations could also take place in the future as a consequence of global warming, for instance,” says Linda Ampel.
Adapted from materials provided by VetenskapsrĂ¥det (The Swedish Research Council), via AlphaGalileo.

Climate Change Reduces Nutritional Value Of Algae

Micro-algae are growing faster under the influence of climate change. However, the composition of the algae is changing, as a result of which their nutritional value for other aquatic life is decreasing. And because algae are at the bottom of the food chain, climate change is exerting an effect on underwater life.
This is the conclusion of researchers from the Netherlands Institute for Ecology (NIOO-KNAW) and the Universiteit van Amsterdam.
Dutch researchers wanted to know whether an increased CO2 concentration exerted an influence on underwater life. They therefore examined freshwater micro-algae: small, floating and mostly unicellular algae. The experiments were performed in large tanks called limnotrons. These were aerated with ordinary air or with air containing an elevated concentration of CO2. The researchers then examined the ratio between the important elements carbon, nitrogen and phosphorous.
First link in the food chain
The micro-algae grew faster at a higher CO2 concentration, exactly as the researchers had expected. Yet this growth was also associated with a change in the composition of the algae. The algae cultured at a higher CO2 concentration contained relatively more carbon and relatively less phosphorous. This meant a reduction in the nutritional value, which could have detrimental effects upon the small animals that eat the algae such as water fleas. These in turn form food for fish, for example. As they are the first link in the underwater food chain, the algae ultimately influence the entire ecosystem.
In a follow-up study, the Centre for Limnology (NIOO-KNAW) and the Department of Aquatic Microbiology at Universiteit van Amsterdam will examine what effects the reduced nutritional value of the algae can have in real ecosystems. Meanwhile, it is already clear that the effects can become more pronounced as a result of higher water temperatures.
The best-know effects of climate change are shifts in the habitats of animals and plants, for example, species that spread further northwards. This research has shown that climate change can also exert significant effects on the underwater food chain.
Adapted from materials provided by NWO (Netherlands Organization for Scientific Research).

Sunday, January 11, 2009

Biofuel Development Shifting From Soil To Sea, Specifically To Marine Algae


Bell-bottoms… Designer jeans… Disco… Big hair… Gas shortages. Some icons of the 1970s are emblazoned in the memories of those old enough to remember. A few styles, to the dismay of many, have come back in vogue—oil-related crises among them. Broad anxiety over fuel manifested again in 2008, illuminating the dark side of the nation’s continued oil addiction.


Out of the ‘70s oil crisis came U.S. government funding for research evaluating the prospects of new fuel sources derived from terrestrial plants such as corn and soybeans, as well as algae. But when oil prices plummeted in the late 1980s and ‘90s, interest in such biofuel programs waned and support dried up. Now 21st century gas prices—which bolted upward to $4.50 a gallon in California earlier this year—have sparked a renaissance in the search for new biologically based energy solutions.
Today, the most fervent attention in biofuel development has shifted from soil to the sea, and specifically to marine algae. Scientists at Scripps Institution of Oceanography at UC San Diego, along with researchers at UCSD’s Division of Biological Sciences, are part of an emerging algal biofuel consortium that includes academic collaborators, CleanTECH San Diego, regional industry representatives, and public and private partners.
Scripps scientists see algae as a “green bullet,” science and society’s best hope for a clean bioenergy source that will help loosen broad dependence on fossil fuel, counteract climate warming, and power the vehicles of the future.
As far back as he can recall, Scripps biologist Greg Mitchell has been fascinated by plants and photosynthesis. His interest lies in Earth’s basic energy patterns and how sunlight drives fundamental biological functions and energizes the world’s ecosystems.
He has built his scientific career on researching photosynthesis, the process in which the planet’s green organisms integrate sunlight, carbon dioxide, nutrients, and water to produce oxygen and carbohydrates, creating biomass.
Since he arrived at Scripps in 1987, Mitchell has kept close tabs on advancements in studies of algae as a potential source for biofuels, including landmark experiments by the U.S. Department of Energy’s National Renewable Energy Laboratory, a research and development facility. Scripps Professor Emeritus Ralph Lewin had a hand in these efforts in the early 1980s when he successfully grew marine algae for biofuel in experimental ponds.
As funding for such projects evaporated in the 1990s, Mitchell never took his eyes off the field.
Marine algae, as Mitchell is quick to point out to anyone who asks, are the most efficient organisms on Earth for absorbing light energy and converting it into a natural biomass oil product, the biofuel equivalent of crude oil.
“Algae yields five to 10 times more bioenergy molecules per area, per time, than any terrestrial plant,” said Mitchell, a native of oil-rich Houston, Texas. “Nothing else comes close.”
From a sustainability perspective, algae hold the upper hand against other biofuel candidates, such as corn and soybeans. Algae can be grown on barren desert land using salt water, averting competition with agricultural cropland and the need for large amounts of precious fresh water for irrigation.
Since they require carbon dioxide for growth, algae are inherently carbon neutral, and they can suck up CO2 directly from industrial pollution sources. Furthermore, algae can feed off the nutrients in discarded wastewater. Adding yet another layer to their allure, the rich protein left over from algae harvests can be converted to animal feed.
“There is still a lot of work to do, but algal-derived biofuels have the potential to become a major source of transportation fuel,” says Bernard Raemy, executive vice president of Carbon Capture Corporation, a company growing algae in ponds for biofuel research in California’s Imperial Valley desert.
Raemy acknowledges that a string of challenges lies ahead, but with appropriate investment he believes a new algal biofuel industry, based on collaborations with public and private sectors, could be built within 10 years.
“Given their advantages, I believe marine algae are not only the most promising option for bioenergy fuel, but the only option that can scale up massively at the global level,” said Mitchell. “Most scientists who understand these processes are concluding that algae has the best chance. There is no silver bullet when it comes to energy, but there is a green bullet, or rather a green missile.”
The prospect of squeezing billions of gallons of biofuel oil from marine algae is enticing, but to transform tiny lime-green-colored plant-like organisms into a viable and realistic fuel option, they must be tested and grown on a massive scale. Intermediate-sized, and eventually immense, algae production sites will be required to produce an economically relevant quantity of algae-based oil for biodiesel fuel in cars, trucks, and airplanes.
Such facilities are beginning to emerge, featuring farms with vast oval-shaped ponds capable of churning out hundreds of pounds of algal biomass per day. But these facilities are in their formative stages and face an array of problems, from selecting which species of algae are the best candidates for biofuel output to addressing the threat of airborne contaminants that invade algae ponds and disrupt growth processes.
In 2005, as gas prices continued to rise and long-term oil supplies grew increasingly suspect, interest in algal biofuel research began to stir and society began to awaken on a large scale to the issues of fossil fuel emissions and a warming planet. Mitchell, who spent years promoting algal biofuel but was largely dismissed, jumped in with zeal. He began organizing seminars and meetings on the topic, in addition to coordinating efforts with national and international algal biofuel stakeholders. He played a pivotal role in establishing a new algal biomass organization and helped plan summits on the topic in San Francisco in 2007 and Seattle in 2008.
At the same time, Mitchell’s laboratory began evaluating various species of algae for their biofuel potential. Today, the lab is evaluating diverse algal growth scenarios and resultant biological models, or test cases, which could be applied in algal pond farms.
Scripps Oceanography, UC San Diego, and San Diego in general are uniquely positioned to lead algal biofuel efforts, according to Mitchell. Besides his laboratory, efforts have emerged across Scripps, including initiatives by scientists William Gerwick, Mark Hildebrand, Mike Landry, Brian Palenik, and Maria Vernet.
“By virtue of the expertise found at Scripps and UC San Diego, this region has a fundamental critical mass of talent—with biological oceanographers, aquatic microbiologists, UCSD biologists, and a world-class biotechnology industry—that’s not available anywhere else,” Mitchell said.
Up one floor from Mitchell’s office inside Scripps Oceanography’s Sverdrup Hall is William Gerwick’s bustling laboratory, part of Scripps’ Center for Marine Biotechnology and Biomedicine.
A 1981 Scripps Ph.D. graduate in oceanography who returned as a professor in 2005, Gerwick is one of several researchers at Scripps searching for new biomedical products from ocean resources to help treat human diseases such as cancer.
Two years ago Gerwick and then-UCSD undergraduate student Cameron Coates, now a graduate student at Scripps, began applying the tricks of the marine drug discovery trade to algal biofuel development.
“Algae are my life,” said Gerwick, who believes algal biofuel development will require expertise across several disciplines. “There is an amazing transformation happening at the moment with a groundswell of interest in new energy sources.”
Gerwick’s team deciphers the structures of molecules and probes the metabolic processes that produce unique and sometimes medically promising compounds. Such expertise could similarly help unlock the mysteries of algae’s biofuel potential. The organism’s energy sources reside in its production of lipid oils, or fat molecules, that store energy. Algae produce and store globules of lipids in a fashion similar to the way fat is generated and accumulated in human bodies.
A relatively simple chemical process turns the solid lipid globules to liquid. A few more steps convert the liquid to biodiesel fuel for cars and trucks, and, in the near future, jet fuel. Because algae reproduce quickly—they can double their numbers in a single day—it’s believed they can more efficiently produce many more gallons of oil per acre than any other source.
Gerwick’s team is working on methods to rapidly identify algae species to address situations in which algal biofuel ponds of one species are contaminated with another.
They are also using an imaging technique called mass spectrometry to explore the inner workings of organisms at the molecular level. The tool is helping the scientists determine the mechanisms of the genes that produce lipid molecules in the hopes of boosting lipid oil production by adding certain molecules to algal cultures.
“We have tested about 15 different ways for eliciting (lipids),” said Gerwick. “We see some evidence in which we were able to greatly expand their growth rate and production of oils. It’s early but I’m excited.”
Like Gerwick, Scripps biologist Mark Hildebrand only recently initiated algal biofuel studies in his laboratory at Scripps’ Hubbs Hall.
Hidebrand is optimistic about algae’s contribution to future bioenergy solutions, but he is realistic about the challenges ahead. And he is especially sensitive to misinformation being generated to the public about algae and biofuel. He particularly winces when he comes across public descriptions of biofuel algae as “common pond scum.”
For the record, many algae targeted for biofuel inhabit the sea, rather than terrestrial ponds. And the algae Hildebrand studies, tiny algae called diatoms, are far from scummy. He is quick to point out, backed by striking nano-scale images of the one-celled organisms, that they, in fact, can be quite beautiful.
He and members of his lab are probing a catch-22 presented in algal biofuel research. Algae mainly produce desired lipid oils when they are starved for nutrients. Yet if they are limited in nutrients, they don’t grow well. Give them a healthy diet of nutrients and they grow just fine, but they produce carbohydrates instead of lipids.
Thus Hildebrand is investigating how genes are turned on, or “expressed,” in lipid production.
“If we can grow cells under conditions where they are not making lipids and another batch where they are, we can compare changes in gene expression patterns and that will help us identify the genes that are induced when lipids are produced,” said Hildebrand.
Hildebrand uses fluorescent dye to measure lipid content and is developing genetic manipulation tools to induce or repress the expression of these genes. He is also seeking to determine how the cell is “partitioning” carbon between lipids or carbohydrates, and then looking to metabolically engineer the cell to use more carbon for lipid synthesis.
Such investigations and others by his colleagues are vital, Hildebrand said, in order to lay a badly needed basic research foundation for the emerging algal biofuel industry.
The monumental upside of algae, Hildebrand maintains, is that lipids have shown great promise as a robust energy source. Oils derived from certain algae species have already been converted to fuel. Now it’s a matter of economics and the engineering needed to ramp up to large-scale production, along with a range of trials and tribulations that must be addressed.
“We know almost nothing about how lipids are synthesized and where the gene regulation is occurring. It’s like proposing to develop agriculture without understanding how plants grow,” said Hildebrand. “We’ll need to keep studying new areas and coming up with new solutions because new problems will need to be addressed. That’s the beauty of basic research.”
Adapted from materials provided by University of California, San Diego, Scripps Institution of Oceanography, via Newswise.

Friday, November 14, 2008

Low oxygen levels leading to high mortality of fish in Gulf of Mannar


Studies conducted in the waters of the Gulf of Mannar point to low levels of oxygen leading to high mortality of fish.
The Regional Centre of Central Marine Fisheries Research Institute (CMFRI), Mandapam, has found out that this is due to the blooming of a harmful marine, dinoflagellate (noctiluca scintillans), a minute marine species.
Another study undertaken by Madurai Kamaraj University’s Centre for Marine Studies has revealed that oxygen levels have depleted due to outbreak of ‘red tide’ phenomenon caused by blooming of organisms, which discolour the ocean surface.


The massive blooming of the organism has reduced the oxygen level in many of the landing centres between 1 and 1.2 ml per litres as against the normal level of 4.5 to 5 ml, causing breathing problems for fishes, the CMFRI study says. It has caused the death of a large number of fish in the past few days. The size of the organisms is between 200 and 2000 microns.
Speaking to The Hindu on Saturday G. Gopakumar, scientist-in-charge, CMFRI, said fish species such as rabbit, parrot, goat, serrandis, silverbellies, surgeon fishes and other benthic fishes, mostly associated with coral reefs, were the ones mainly affected due to the blooming of dinoflagellate. The origin of the bloom was from Periapattinam and it had spread to several areas from Keelakarai to Thonithurai.
Although the species was colourless, the presence of photosynthetic green endosymbiont made the water green. The colour of the sea might change to pinkish red or orange depending upon the endosymbiont of the species.


Although the blooming of noctiluca had occurred a few times in Gulf of Mannar in the past, large-scale blooming happened only in the recent past. Drastic changes in environment of the sea such as very high temperature, extreme low wind velocity and no water current were the reasons.
The study found the noctiluca to be non-toxic, Mr. Gopakumar said. However, he cautioned people against eating dead fish found along the landing centres of the Gulf of Mannar. He said the problem might come down shortly, when the organisms find it difficult to get food. However, they might spread to other areas, as they multiplied into millions in no time.
The MKU study concluded that extensive patches of green-coloured water were observed along the 50-km coast from Mandapam to Keelakarai. Subsequent laboratory analysis found that the organism responsible for this phenomenon was ‘Noctiluca.’


“A variety of marine organisms were killed and washed ashore along the coast, including edible/ornamental fishes, crabs, lobsters, sea cucumbers, eels etc. The red tide phenomenon is a threat to marine biodiversity ,” A. K. Kumaraguru, Director, Centre for Marine and Coastal Studies, Madurai Kamaraj University, told The Hindu on Saturday.
The centre, located at Pudumadam near Mandapam, has come out with a report that the dissolved oxygen in coastal waters has been depleted by red tide organisms. Living organisms in sea depend on the dissolved oxygen for their survival.
Dr. Kumaraguru cited the laboratory report that showed the increasing density of algal cells in sea water. “It is usually a few hundred cells per litre but it has gone up to 12.7 lakh cells per litre. The dissolved oxygen level. which used to be 5 to 6 mg per litre has gone down to as low as 0.64 mg per litre,” he said.
The team of scientists attributed the outbreak of ‘algal bloom’ to coastal marine pollution along the Gulf of Mannar due to indiscriminate dumping of municipal and domestic sewage. Absence of monsoon winds might have caused rapid multiplication of algal cells.

Source: THE HINDU 12/10/2008

Friday, October 31, 2008

Why Some Marine Algae Are Shaped Like Crumpled Paper


What is the connection between crumpled paper and marine algae? Saddle-like shapes similar to those found in an Elizabethan "ruff" collar, say the physicists at the Laboratory for Statistical Physics at the Ecole normale supérieure.


They have modeled them and calculated their energy. It turns out that the most stable shape is that adopted by certain marine algae.
A practical experiment
Cut out a disk from a sheet of paper, place it on your coffee cup, and press the tip of your pen down on the center of the disk: the paper curls up, forming a cone-shaped fold. In the language of physics, this is known as a 'conical point'. When you crumple up a sheet of paper, you can also see miniature conical points, which are formed starting out from the folds.
Ice cream cones or ruffs
Two researchers at the Laboratory for Statistical Physics at the Ecole normale supérieure have studied these conical points. Or to be more precise, they tried to see how conical points generate 'e-cones'. What is an e-cone? If you remove a wedge from a disk and stick together the edges of the remaining shape, you get an 'ice-cream cone'. Whereas if you add a wedge that is larger than the one that was removed, you get an e-cone (e stands for excess).
E-cones can take on an infinite number of shapes, without the intervention of any external force. The physicists modeled these e-cones in order to predict their shape and the elastic stresses generated. Their work shows that the symmetrical shape with two folds is the one with the lowest energy. This is found in certain marine algae which spontaneously adopt this shape during growth.
Journal reference:
Martin Michael MĂ¼ller, Martine Ben Amar, Jemal Guven. Conical Defects in Growing Sheets. Physical Review Letters, 2008; 101 (15): 156104 DOI: 10.1103/PhysRevLett.101.156104
Adapted from materials provided by CNRS.

Thursday, August 21, 2008

Biologists Find Diatom To Reduce Red Tide's Toxicity

It's estimated that the red tide algae, Karenia brevis, costs approximately $20 million per bloom in economic damage off the coast of Florida alone. Scientists at the Georgia Institute of Technology have found that a diatom can reduce the levels of the red tide's toxicity to animals and that the same diatom can reduce its toxicity to other algae as well.If scientists can learn to use this process to reduce the toxicity of red tide, they could reduce the vast amount of economic damage done to the seafood and tourism industries. The research appears as articles in press for the Web sites of the journals Harmful Algae and the Proceedings of the Royal Society of London B."We found that red tide toxins can be metabolized by other species of phytoplankton. That holds true for both the brevetoxins that damage members of the animal kingdom and the as yet unknown allelopathic toxins that kill other competing species of algae," said Julia Kubanek, an associate professor with a joint appointment in Georgia Tech's School of Biology and School of Chemistry and Biochemistry.Red tide is a dramatic case of an ecosystem that's out of control. In normal seawater, K. brevis makes up about 1 percent or less of the species, but during a red tide, that share increases to more than 90 percent. Filter feeders such as oysters, mussels and clams ingest the dinoflagellate and become unsafe to eat. Fish killed by the red tide wash on the shore, which can be contaminated and essentially unusable to tourists for months at a time.Kubanek and her researchers found in previous work that the growth of the diatom Skeletonema costatum was only moderately suppressed by the brevetoxins released by the red tide. So, they figured that the diatom might have a way to deal with the toxins. According to their study, they were right.In one experiment, detailed in the journal Harmful Algae, Kubanek's students grew the red tide algae along with the S. costatum diatom to test her group's hypothesis and found that the samples with both organisms had a smaller concentration of brevetoxin B than samples without the diatom. They also tested the algae with four different S. costatum diatom strains from around the world and came up with largely the same results. That suggests that evolutionary experience with the red tide algae was not necessary for the diatom to resist the toxins.In another experiment, covered in Proceedings of the Royal Society B, they found that the red tide algae was able to reduce the growth of the S. costatum diatom, but that exposure of the red tide organism to S. costatum makes the red tide less toxic to microscopic algae. That suggests that the diatom is somehow able to reduce the potency of red tide's toxins."It could be that Skeletonema is degrading Karenia's allelopathic chemicals just like it degrades brevetoxins. Or, it could be that Skeletonema is stressing Karenia out, making it harder to produce allelopathic chemicals," said Kubanek.What they do know is that the brevetoxins that harm oysters and other members of the animal kingdom aren't the whole story."We found that when we took seawater and added purified brevetoxins to it, the live algae didn't suffer much, so there must be other chemicals released by the red tide that are toxic to these algae," said Kubanek.How that's done, isn't clear yet, but Kubanek and her group are currently working on finding the answer to that question."What we do know is that this diatom, S. costatum, is able to undermine these toxins produced by the red tide, as well as the brevetoxins that are known to kill vertebrate animals like fish and dolphins," said Kubanek.If scientists such as Kubanek and her team can learn more about the strategies that microscopic algae use to reduce the toxicity of red tide, they might be able to use that knowledge to help reduce the poisonous effects the tide has on the animal kingdom, not to mention the damage it does to the seafood and tourism industries.Kubanek's research team for these studies consisted of Tracey Myers and Emily Prince from Georgia Tech and Jerome Naar of the Center for Marine Science at the University of North Carolina at Wilmington.Source: Georgia Institute of Technology.

Wednesday, August 06, 2008

Algae are in bloom, and they're choking life out of Barnegat Bay

On a clear morning in the Barnegat Bay, Pete McLain takes a small boatout to survey what's left of the beds of eelgrass underwater. Havingworked with the state's Department of Environmental Protection fornearly 50 years, he has studied the bay for a large part of his life.In the early 1930s, New Jersey's eelgrass - a form of sea grass thatserves as a habitat and food source for many marine species - was almostwiped out by disease. After decades of recovery, the eelgrass could belost once again."It's really not growing very well here," said McLain, 82, as he holdsshort, discolored blades in his hand. Healthy eelgrass grows to 3 to 4feet long, more than 10 times as long as what he sees in the bay.McLain, director of the Emily DeCamp Herbarium at Island Beach StatePark, and several other volunteers and students collect samples ofeelgrass and macroalgae. He estimates they have collected 20 to 30different species of algae since the project began earlier this year.The macroalgae in the bay have increased exponentially in recent years.McLain believes it's due to excess nitrogen coming from human waste thatfinds its way into the bay. Nitrogen is an essential element - itoutnumbers oxygen in the atmosphere almost four to one - and algaethrive on it.But eelgrass thrives on sunlight, and with so much algae covering theplants, the sunlight is unable to reach them, preventing photosynthesisand their ability to create oxygen for the species underwater that needit to live.Brick Township resident Christi Campbell, 19, is one of the students whois helping McLain with his research this summer. McLain takes studentsand other volunteers out to different parts of the bay, where they rakeup whatever algae they can find.As she pulls algae from the bay, Campbell peels the algae from theeelgrass. In many instances, the algae completely surround every blade."The light doesn't get to the small organisms, and they die," Campbellsaid.While McLain tackles the northern end of the bay, he's making sure thesouthern end is not ignored. He approached The Richard Stockton Collegeof New Jersey's Marine Science and Environmental Field Station with theidea that students taking part in a research education project alsocould collect macroalgae samples."We offered to make collections for him," said Steve Evert, the managerfor the field station. "We just utilized one of our existing courses."Algae collection is just a small portion of the work the studentsperform over the summer as part of an underwater survey methods classthe station offers. Evert said students found using snorkeling equipmentis the best method of collection.Once the students collected the algae, much like McLain's northern bayproject, they attempted to identify the different types they found inthe water. Since this is a new project, it provides an education to theinstructors as well as the students."We used this experience as a learning opportunity for ourselves withthese types of algae," Evert said. "Whether all of our identificationsare correct has yet to be seen."While this is the first year of the algae and eelgrass collectionproject, researchers know that the risks to sea grass and what hashappened over the past few decades are very real.Michael Kennish, associate research professor at the Rutgers Instituteof Marine and Coastal Sciences, calls algae a "very damaging species,"and said that Rutgers has known about the nitrogen problem in BarnegatBay since the 1990s."The sea grass is a good indicator of the water quality in the bay,"Kennish said.According to Kennish, one of the major problems with the Barnegat Bay isthat it is an estuary locked in by a barrier island, whereas an estuarysuch as the Delaware Bay flows directly into the Atlantic Ocean."There are no nitrogen problems in the Delaware Bay," Kennish said. "Thewater flushes out of the bay very quickly."Because of the barrier island, it can take as long as 75 days for excessnitrogen and other unwanted materials to be removed naturally by thewater in Barnegat Bay.Algae accumulation can be extremely problematic. As China prepares tohost the summer Olympics next month, crews have been working around theclock to clean up excess algae where the world's top sailors areexpected to compete. The algae bloom covers one-third of Qingdao Bay.It's the kind of situation that, through proper research and action,McLain is hoping to avoid close to home."We're not there yet," McLain said. "But it's bad enough now that wedon't have the bay the way it should be."E-mail Ben Leach:BLeach@pressofac.com